{"id":3338,"date":"2025-05-27T15:45:22","date_gmt":"2025-05-27T14:45:22","guid":{"rendered":"https:\/\/weseq.it\/?post_type=ht_kb&#038;p=3338"},"modified":"2025-05-27T15:45:25","modified_gmt":"2025-05-27T14:45:25","slug":"porownanie-illumina-i-aviti","status":"publish","type":"ht_kb","link":"https:\/\/weseq.it\/en\/baza_wiedzy\/porownanie-illumina-i-aviti\/","title":{"rendered":"Por\u00f3wnanie: Illumina i AVITI"},"content":{"rendered":"<p>Obie platformy \u2013\u00a0<strong>Illumina<\/strong>\u00a0oraz\u00a0<strong>AVITI (Element Biosciences)<\/strong>\u00a0\u2013 oferuj\u0105 zaawansowane technologie sekwencjonowania, lecz r\u00f3\u017cni\u0105 si\u0119 pod wzgl\u0119dem do\u015bwiadczenia rynkowego, technologii oraz parametr\u00f3w technicznych.<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li><strong>Illumina<\/strong>\u00a0\u2013 od ponad 25 lat na rynku, uznany standard w sekwencjonowaniu NGS. Technologia SBS, szerokie zastosowanie, wysoka wydajno\u015b\u0107 (do 20 mld odczyt\u00f3w\/run), dok\u0142adno\u015b\u0107 na poziomie Q30. Bardzo rozbudowana, globalna sie\u0107 serwisow\u0105. Setki przetestowanych protoko\u0142\u00f3w, zastosowa\u0144 oraz wykorzystania opublikowanych w ogromnej ilo\u015bci publikacji naukowych.<\/li>\n\n\n\n<li><strong>AVITI<\/strong>\u00a0\u2013 nowy gracz (od 2022), innowacyjna chemia Avidity Sequencing, dok\u0142adno\u015b\u0107 Q40+, ni\u017csze koszty na Gb danych, kompatybilno\u015b\u0107 z bibliotekami Illumina. Dost\u0119pno\u015b\u0107 sprz\u0119tu i odczynnik\u00f3w jest niska ale ro\u015bnie. Globalna sie\u0107 jeszcze w fazie rozwoju. Brak informacji o awaryjno\u015bci \/ problemach \/ proponowanych rozwi\u0105zaniach ze wzgl\u0119du na kr\u00f3tki okres obecno\u015bci na rynku. <\/li>\n<\/ul>\n\n\n\n<p>Obie platformy maj\u0105 swoje mocne strony \u2013 wyb\u00f3r powinien zale\u017ce\u0107 od specyfiki projektu, dost\u0119pnego bud\u017cetu i oczekiwanej skali sekwencjonowania.<\/p>\n\n\n\n<p>Oto rzetelne, obiektywne por\u00f3wnanie platform Illumina i AVITI w formie tabeli, oparte na danych z publikacji naukowych oraz materia\u0142\u00f3w producent\u00f3w:<\/p>\n\n\n\n<figure class=\"wp-block-table\"><table class=\"has-fixed-layout\"><thead><tr><th>Kryterium<\/th><th>Illumina<\/th><th>AVITI (Element Biosciences)<\/th><\/tr><\/thead><tbody><tr><td><strong>Okres dzia\u0142ania na rynku<\/strong><\/td><td>Od 1998 r.<\/td><td>Od 2022 r. (firma dzia\u0142a od 2017 r.)<\/td><\/tr><tr><td><strong>Technologia<\/strong><\/td><td>Sequencing by Synthesis (SBS)<\/td><td>Avidity Sequencing<\/td><\/tr><tr><td><strong>D\u0142ugo\u015b\u0107 odczytu<\/strong><\/td><td>MiniSeq: do 2\u00d7150 bp; MiSeq: do 2\u00d7300 bp; NextSeq: do 2\u00d7150 bp; NovaSeq 6000: do 2\u00d7250 bp; NovaSeq X: do 2\u00d7150 bp<\/td><td>2\u00d775 bp, 2\u00d7150 bp, 2\u00d7300 bp; Syntetyczne odczyty do 5 kb (LoopSeq)<\/td><\/tr><tr><td><strong>Dok\u0142adno\u015b\u0107 odczyt\u00f3w<\/strong><\/td><td>Q30 (99,9% dok\u0142adno\u015bci, 1 b\u0142\u0105d\/1000 baz)*<\/td><td>Q40 (99,99% dok\u0142adno\u015bci, 1 b\u0142\u0105d\/10 000 baz)*<\/td><\/tr><tr><td><strong>Maks. liczba odczyt\u00f3w\/run<\/strong><\/td><td>Do 20 mld (NovaSeq X Plus)<\/td><td>Do 2 mld odczyt\u00f3w (2\u00d7150 bp, 38 h)<\/td><\/tr><tr><td><strong>Czas trwania runu<\/strong><\/td><td>13\u201344 h (w zale\u017cno\u015bci od konfiguracji)<\/td><td>20\u201360 h (zale\u017cnie od trybu)<\/td><\/tr><tr><td><strong>Kompatybilno\u015b\u0107 bibliotek<\/strong><\/td><td>Wymaga bibliotek Illumina, szeroki wyb\u00f3r protoko\u0142\u00f3w<\/td><td>Kompatybilny z bibliotekami Illumina, w\u0142asne zestawy (Cloudbreak, Trinity)<\/td><\/tr><tr><td><strong>Dost\u0119pno\u015b\u0107<\/strong><\/td><td>Globalna, rozbudowana sie\u0107 wsparcia<\/td><td>Wzrastaj\u0105ca, dost\u0119pno\u015b\u0107 zale\u017cna od regionu<\/td><\/tr><tr><td><strong>Awaryjno\u015b\u0107<\/strong><\/td><td>Uznawane za stabilne; notowano przypadki \u201ebarcode hopping\u201d w HiSeq 4000\/NovaSeq<\/td><td>Brak istotnych raport\u00f3w o problemach; technologia nowa, mniej danych o d\u0142ugoterminowej stabilno\u015bci<\/td><\/tr><tr><td><strong>Koszty (sprz\u0119t)<\/strong><\/td><td>&gt;1 mln USD (NovaSeq X); wy\u017csze koszty odczynnik\u00f3w<\/td><td>Ok. 350 000 USD; ni\u017csze koszty na Gb danych<\/td><\/tr><tr><td><strong>Zastosowania<\/strong><\/td><td>WGS, RNA-seq, ChIP-seq, metagenomika, diagnostyka kliniczna<\/td><td>WGS, RNA-seq, amplicony, metagenomika, sekwencjonowanie RNA (scRNA-Seq, miRNA-Seq)<\/td><\/tr><tr><td><strong>Liczba dost\u0119pnych modeli<\/strong><\/td><td>Co najmniej 9 modeli (MiniSeq, MiSeq, iSeq 100, NextSeq 550\/1000\/2000, NovaSeq 6000\/X, HiSeq)<\/td><td>3 modele (AVITI, AVITI LT, AVITI24)<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<hr class=\"wp-block-separator has-alpha-channel-opacity\"\/>\n\n\n\n<p>* dok\u0142adno\u015b\u0107 sekwencjonowania \/ jako\u015b\u0107 odczyt\u00f3w zale\u017cy od bibliotek, a z kolei jako\u015b\u0107 bibliotek zale\u017cy od jako\u015bci pr\u00f3bki. <strong>Zatem nale\u017cy zawsze mie\u0107 na uwadze i\u017c ogromny wp\u0142yw na jako\u015b\u0107 wynik\u00f3w sekwencjonowania ma pr\u00f3bka<\/strong>!<\/p>","protected":false},"excerpt":{"rendered":"<p>Obie platformy \u2013\u00a0Illumina\u00a0oraz\u00a0AVITI (Element Biosciences)\u00a0\u2013 oferuj\u0105 zaawansowane technologie sekwencjonowania, lecz r\u00f3\u017cni\u0105 si\u0119 pod wzgl\u0119dem do\u015bwiadczenia rynkowego, technologii oraz parametr\u00f3w technicznych. Obie platformy maj\u0105 swoje mocne strony \u2013 wyb\u00f3r powinien zale\u017ce\u0107 od specyfiki projektu, dost\u0119pnego bud\u017cetu i oczekiwanej skali sekwencjonowania. Oto rzetelne, obiektywne por\u00f3wnanie platform Illumina i AVITI w formie tabeli,&#8230;<\/p>","protected":false},"author":1,"comment_status":"open","ping_status":"closed","template":"","format":"standard","meta":{"footnotes":""},"ht-kb-category":[218],"ht-kb-tag":[197,219,221,223,220,105],"class_list":["post-3338","ht_kb","type-ht_kb","status-publish","format-standard","hentry","ht_kb_category-news","ht_kb_tag-16s","ht_kb_tag-amplicon","ht_kb_tag-aviti","ht_kb_tag-element-biosciences","ht_kb_tag-illumina","ht_kb_tag-ngs"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v24.9 (Yoast SEO v27.4) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>Por\u00f3wnanie: Illumina i AVITI - weSEQ.IT<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/weseq.it\/en\/baza_wiedzy\/porownanie-illumina-i-aviti\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Por\u00f3wnanie: Illumina i AVITI\" \/>\n<meta property=\"og:description\" content=\"Obie platformy \u2013\u00a0Illumina\u00a0oraz\u00a0AVITI (Element Biosciences)\u00a0\u2013 oferuj\u0105 zaawansowane technologie sekwencjonowania, lecz r\u00f3\u017cni\u0105 si\u0119 pod wzgl\u0119dem do\u015bwiadczenia rynkowego, technologii oraz parametr\u00f3w technicznych. 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